STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOL8Nucleolar protein 8. (1202 aa)    
Predicted Functional Partners:
DDX10
DEAD-box helicase 10.
   
 
 0.870
MPHOSPH10
M-phase phosphoprotein 10.
   
  
 0.838
SDAD1
SDA1 domain containing 1.
   
  
 0.704
URB1
URB1 ribosome biogenesis homolog.
   
 
 0.630
NIP7
Nucleolar pre-rRNA processing protein NIP7.
    
 
 0.623
CEBPZ
CCAAT enhancer binding protein zeta.
   
    0.583
DDX51
DEAD-box helicase 51.
   
   0.550
ZNHIT6
Zinc finger HIT-type containing 6.
   
  
 0.543
BCCIP
BRCA2 and CDKN1A interacting protein.
   
  
 0.542
WDR89
WD repeat domain 89.
    
   0.530
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.