STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LACC1Laccase domain containing 1. (438 aa)    
Predicted Functional Partners:
PLPBP
Pyridoxal phosphate binding protein.
  
  
 0.932
TTF2
Transcription termination factor 2.
     
 0.662
PARK7
Parkinsonism associated deglycase.
     
 0.609
CCDC122
Coiled-coil domain containing 122.
   
  
 0.555
LOC106888374
Hypoxanthine-guanine phosphoribosyltransferase-like.
  
 
  0.531
PRTFDC1
Phosphoribosyl transferase domain containing 1.
  
 
  0.531
HPRT1
Hypoxanthine phosphoribosyltransferase 1.
  
 
  0.531
APRT
Adenine phosphoribosyltransferase.
    
  0.476
LOC106894430
Adenine phosphoribosyltransferase-like.
    
  0.476
MTAP
Methylthioadenosine phosphorylase.
    
  0.470
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.