STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNB2Lamin B2. (600 aa)    
Predicted Functional Partners:
CASP6
Caspase 6.
    
 0.873
LOC106889600
lamin-L(III)-like.
  
  
0.832
LEMD3
LEM domain containing 3.
    
 0.760
SUN2
Sad1 and UNC84 domain containing 2.
    
 0.760
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.717
LOC106897769
Granzyme G-like.
    
 0.640
LOC106897766
Mast cell protease 1A-like.
    
 0.640
RBM39
RNA binding motif protein 39.
   
 0.620
ARHGAP39
Rho GTPase activating protein 39.
    
  0.602
LOC106899389
Rho GTPase-activating protein 39-like.
    
  0.602
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.