STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LONP1Lon peptidase 1, mitochondrial. (927 aa)    
Predicted Functional Partners:
ENSCPUP00000021415
annotation not available
  
 
 0.863
SAMM50
SAMM50 sorting and assembly machinery component.
  
 
 0.856
TOMM40L
Translocase of outer mitochondrial membrane 40 like.
   
 
 0.852
GRPEL1
GrpE like 1, mitochondrial.
  
  
 0.802
GRPEL2
GrpE like 2, mitochondrial.
  
  
 0.802
NCDN
Neurochondrin.
     
 0.789
TYSND1
Trypsin domain containing 1.
  
 0.782
CLPX
Caseinolytic mitochondrial matrix peptidase chaperone subunit.
 
 
 0.781
AFG3L2
AFG3 like matrix AAA peptidase subunit 2.
  
 
 0.707
YME1L1
YME1 like 1 ATPase.
  
 
 0.702
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.