STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC25Coiled-coil domain containing 25. (278 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
   
 
 0.773
PKD2
Polycystin 2, transient receptor potential cation channel.
    
 0.634
PKDREJ
Polycystin family receptor for egg jelly.
    
 0.634
PKD2L2
Polycystin 2 like 2, transient receptor potential cation channel.
    
 0.634
MYOT
Myotilin.
    
 0.634
PKD1L2
Polycystin 1 like 2.
    
 0.634
PKD2L1
Polycystin 2 like 1, transient receptor potential cation channel.
    
 0.634
PKD1
Polycystin 1, transient receptor potential channel interacting.
    
 0.634
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
      
 0.593
TOMM40L
Translocase of outer mitochondrial membrane 40 like.
 
      0.535
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.