STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS36Vacuolar protein sorting 36 homolog. (386 aa)    
Predicted Functional Partners:
SNF8
Vacuolar-sorting protein SNF8.
   
 0.999
VPS25
Vacuolar protein sorting 25 homolog.
   
 0.999
VPS28
Vacuolar protein sorting-associated protein 28 homolog.
    
 0.996
CHMP6
Charged multivesicular body protein 6.
    
 0.994
TSG101
Tumor susceptibility 101.
    
 0.990
UEVLD
UEV and lactate/malate dehyrogenase domains.
    
 0.986
ENSCPUP00000001263
annotation not available
    
 0.984
CHMP2A
Charged multivesicular body protein 2A.
    
 0.984
RPS27A
Ribosomal protein S27a.
    
 0.980
C17orf75
Chromosome unknown open reading frame, human C17orf75.
    
 0.973
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.