STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STOML3Stomatin-like protein 3. (309 aa)    
Predicted Functional Partners:
YME1L1
YME1 like 1 ATPase.
  
 0.765
BCS1L
Mitochondrial chaperone BCS1.
  
 0.765
AFG3L2
AFG3 like matrix AAA peptidase subunit 2.
  
 0.765
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 0.765
C1QBP
Complement C1q binding protein.
   
 0.736
ANLN
Anillin actin binding protein.
    
 0.673
ATP5F1A
ATP synthase F1 subunit alpha.
  
 0.665
RHOH
Ras homolog family member H.
 
  
 0.641
DBT
Dihydrolipoamide branched chain transacylase E2.
  
  0.604
ASIC4
Acid sensing ion channel subunit family member 4.
    
 0.601
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.