STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106900728TATA box-binding protein-associated factor RNA polymerase I subunit D-like. (182 aa)    
Predicted Functional Partners:
TAF1C
TATA-box binding protein associated factor, RNA polymerase I subunit C.
    
 0.947
HINT1
Histidine triad nucleotide binding protein 1.
    
 0.837
TBPL2
TATA-box binding protein like 2.
    
 0.798
TBP
TATA-box binding protein.
    
 0.798
TBPL1
TATA-box binding protein like 1.
    
 0.744
GLOD5
Glyoxalase domain containing 5.
    
 0.731
ENSCPUP00000020111
annotation not available
    
 0.731
UBTF
Upstream binding transcription factor.
    
 0.681
HINT3
Histidine triad nucleotide binding protein 3.
    
 0.659
FHIT
Fragile histidine triad diadenosine triphosphatase.
    
 0.659
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.