STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGXTAlanine--glyoxylate and serine--pyruvate aminotransferase. (422 aa)    
Predicted Functional Partners:
PEX5
Peroxisomal biogenesis factor 5.
    
 0.983
AGXT2
Alanine--glyoxylate aminotransferase 2.
  
 0.967
GLYCTK
Glycerate kinase.
  
 
 0.949
HAO2
Hydroxyacid oxidase 2.
  
 0.948
HAO1
Hydroxyacid oxidase 1.
  
 0.948
PUDP
Pseudouridine 5'-phosphatase.
    
 0.947
PSPH
Phosphoserine phosphatase.
   
 0.945
AMT
Aminomethyltransferase.
  
 
 0.945
LOC106893004
Probable low-specificity L-threonine aldolase 2.
    
 0.944
PSAT1
Phosphoserine aminotransferase 1.
    
 0.943
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.