STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDX2Caudal type homeobox 2. (259 aa)    
Predicted Functional Partners:
FGF4
Fibroblast growth factor 4.
    
 
 0.580
OGG1
8-oxoguanine DNA glycosylase.
      
 0.575
KRT20
Keratin, type I cytoskeletal 20-like.
   
  
 0.541
TIMP2
TIMP metallopeptidase inhibitor 2.
      
 0.532
LOC106892504
POU domain, class 5, transcription factor 3.
    
 
 0.520
GATA6
GATA binding protein 6.
      
 0.515
ENSCPUP00000029559
annotation not available
      
 0.514
ACE
Angiotensin I converting enzyme.
      
 0.504
LOC106896010
Keratin, type II cytoskeletal cochleal.
      
 0.489
NFKB2
Nuclear factor kappa B subunit 2.
    
 
 0.474
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.