STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RFX3Regulatory factor X3. (749 aa)    
Predicted Functional Partners:
CHEK2
Checkpoint kinase 2.
    
 0.931
ATR
ATR serine/threonine kinase.
    
 
 0.910
RFXANK
Regulatory factor X associated ankyrin containing protein.
    
 0.690
DCLK1
Doublecortin like kinase 1.
     
 0.683
ANKRA2
Ankyrin repeat family A member 2.
    
 0.628
FOXJ1
Forkhead box J1.
    
 
 0.622
FOXJ2
Forkhead box J2.
    
 
 0.573
BTAF1
B-TFIID TATA-box binding protein associated factor 1.
    
   0.572
DMTF1
Cyclin D binding myb like transcription factor 1.
    
   0.527
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 
 0.527
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.