STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1269 aa)    
Predicted Functional Partners:
RBM8A
RNA binding motif protein 8A.
    
 0.998
RNPS1
RNA binding protein with serine rich domain 1.
    
 0.998
UPF1
UPF1 RNA helicase and ATPase.
   
 0.998
ZGRF1
Zinc finger GRF-type containing 1.
   
 0.987
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 
 0.980
CASC3
CASC3 exon junction complex subunit.
    
 0.980
ENSCPUP00000009293
annotation not available
   
 0.975
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.974
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
 0.973
SRRM1
Serine and arginine repetitive matrix 1.
    
 0.969
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.