STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX31DEAD-box helicase 31. (714 aa)    
Predicted Functional Partners:
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.964
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.958
DDX52
Probable ATP-dependent RNA helicase DDX52.
  
0.956
RBM19
RNA binding motif protein 19.
   
 0.949
PDCD11
Programmed cell death 11.
  
 0.947
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.937
UTP18
UTP18 small subunit processome component.
   
 0.932
NOP14
NOP14 nucleolar protein.
   
 0.930
DDX10
DEAD-box helicase 10.
  
  
0.927
DDX24
DEAD-box helicase 24.
  
 
0.926
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.