STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XRCC4X-ray repair cross complementing 4. (338 aa)    
Predicted Functional Partners:
LIG4
DNA ligase 4.
    
 0.968
XRCC6
X-ray repair cross complementing 6.
     
 0.962
ENSCPUP00000010672
annotation not available
     
 0.958
NHEJ1
Non-homologous end joining factor 1.
     
 0.957
XRCC5
X-ray repair cross complementing 5.
     
 0.955
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
     
 0.942
XPA
XPA, DNA damage recognition and repair factor.
     
 0.939
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.935
BRCA2
BRCA2 DNA repair associated.
     
 0.935
PALB2
Partner and localizer of BRCA2.
  
 
 0.933
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.