STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106900845Serine/threonine-protein kinase PDIK1L-like. (332 aa)    
Predicted Functional Partners:
BECN1
Beclin 1.
    
 0.902
ATG9A
Autophagy related 9A.
   
 0.900
PIK3R4
Phosphoinositide-3-kinase regulatory subunit 4.
    
 0.900
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.900
ATG2B
Autophagy related 2B.
   
 0.892
ATG13
Autophagy related 13.
   
 0.890
RB1CC1
RB1 inducible coiled-coil 1.
    
 0.885
ATG101
Autophagy related 101.
    
 0.863
ATG14
Autophagy related 14.
    
 0.825
ATG3
Autophagy related 3.
   
 
 0.792
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.