STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKD2L1Polycystin 2 like 1, transient receptor potential cation channel. (708 aa)    
Predicted Functional Partners:
PKD1L2
Polycystin 1 like 2.
    
0.993
PKD1
Polycystin 1, transient receptor potential channel interacting.
    
0.958
PKDREJ
Polycystin family receptor for egg jelly.
    
0.826
EXOC5
Exocyst complex component 5.
     
 0.718
CCDC25
Coiled-coil domain containing 25.
    
 0.634
EXOC4
Exocyst complex component 4-like.
     
 0.608
EXOC8
Exocyst complex component 8.
     
 0.593
TRRAP
Transformation/transcription domain associated protein.
    
  0.576
EXOC6B
Exocyst complex component 6B.
     
 0.570
EXOC6
Exocyst complex component 6.
     
 0.570
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.