STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERGIC2ERGIC and golgi 2. (377 aa)    
Predicted Functional Partners:
ERGIC3
ERGIC and golgi 3.
   
0.999
GTPBP3
GTP binding protein 3, mitochondrial.
  
 0.978
DERL3
Derlin 3.
   
 
 0.905
DERL2
Derlin 2.
   
 
 0.905
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 
 0.902
SEL1L3
SEL1L family member 3.
   
   0.901
LOC106901422
Mitochondrial tRNA-specific 2-thiouridylase 1.
  
 0.746
ENSCPUP00000020105
annotation not available
  
 0.746
GTSE1
G2 and S-phase expressed 1.
  
 0.746
COPB1
Coatomer protein complex subunit beta 1.
   
   0.679
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.