STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAMB1Laminin subunit beta 1. (1785 aa)    
Predicted Functional Partners:
LAMC2
Laminin subunit gamma 2.
   
0.972
LAMC1
Laminin subunit gamma 1.
   
0.971
LAMC3
Laminin subunit gamma 3.
   
0.971
ITGA6
Integrin subunit alpha 6.
    
 0.956
ENSCPUP00000014683
annotation not available
   
 0.951
LAMA4
Laminin subunit alpha 4.
   
0.949
LAMA5
Laminin subunit alpha 5.
   
0.944
LOC106885055
Laminin subunit alpha-3-like.
   
0.944
NTNG1
Netrin G1.
    
0.942
ITGA3
Integrin subunit alpha 3.
    
 0.941
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.