STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DUS4LDihydrouridine synthase 4 like. (315 aa)    
Predicted Functional Partners:
BCAP29
B cell receptor associated protein 29.
 
    
 0.891
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.795
PSMB1
Proteasome 20S subunit beta 1.
   
 
  0.723
TRMT11
tRNA methyltransferase 11 homolog.
  
  
 0.623
TSR3
TSR3 ribosome maturation factor.
   
  
 0.596
TRMT1L
tRNA methyltransferase 1 like.
   
 
 0.591
PUS3
Pseudouridine synthase 3.
  
 
 0.555
TRMT61A
tRNA methyltransferase 61A.
   
  
 0.552
METTL5
Methyltransferase like 5.
 
      0.552
PUS1
Pseudouridine synthase 1.
  
 
 0.550
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.