STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106896487RING finger protein 113A-like. (328 aa)    
Predicted Functional Partners:
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
CWC27
CWC27 spliceosome associated cyclophilin.
    
 0.998
SF3A1
Splicing factor 3a subunit 1.
    
 0.997
CWC22
CWC22 spliceosome associated protein homolog.
    
 0.997
SF3A2
Splicing factor 3a subunit 2.
    
 0.997
SF3B1
Splicing factor 3b subunit 1.
    
 0.997
BUD13
BUD13 homolog.
    
 0.997
SRRM3
Serine/arginine repetitive matrix 3.
    
 0.996
RBMX2
RNA binding motif protein X-linked 2.
   
 0.996
SF3B3
Splicing factor 3b subunit 3.
    
 0.996
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.