STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAF7DDB1 and CUL4 associated factor 7. (342 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 0.980
DYRK1A
Dual specificity tyrosine phosphorylation regulated kinase 1A.
   
 
 0.976
ERCC8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
     
 0.962
DTL
Denticleless E3 ubiquitin protein ligase homolog.
     
 0.952
DDA1
DET1 and DDB1 associated 1.
    
  0.940
ENSCPUP00000018940
annotation not available
    
 0.940
AMBRA1
Autophagy and beclin 1 regulator 1.
    
  0.937
DCAF10
DDB1 and CUL4 associated factor 10.
     
 0.930
FBXW5
F-box and WD repeat domain containing 5.
     
 0.927
RBX1
Ring-box 1.
     
 0.926
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.