STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG2Secretogranin II. (626 aa)    
Predicted Functional Partners:
CHGB
Chromogranin B.
   
  
 0.866
SCG3
Secretogranin III.
   
  
 0.577
SCG5
Secretogranin V.
   
  
 0.535
LOC106902922
Vasotocin-neurophysin VT.
   
  
 0.525
NMU
Neuromedin U.
   
  
 0.518
LOC106894905
Relaxin-3-like.
      
 0.485
CPE
Carboxypeptidase E.
   
  
 0.471
INSL5
Insulin like 5.
      
 0.461
NOS1AP
Nitric oxide synthase 1 adaptor protein.
      
 0.444
ENSCPUP00000001141
annotation not available
      
 0.444
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.