STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000020902annotation not available (440 aa)    
Predicted Functional Partners:
ENSCPUP00000027301
annotation not available
 
   
 0.896
ENSCPUP00000000773
annotation not available
    
  0.808
COL8A1
Collagen type VIII alpha 1 chain.
 
  
 0.786
COL9A2
Collagen type IX alpha 2 chain.
 
   
  0.704
COL8A2
Collagen type VIII alpha 2 chain.
 
   
 0.650
ENSCPUP00000014314
annotation not available
    
0.627
COL10A1
Collagen type X alpha 1 chain.
 
   
  0.543
C1QC
Complement C1q C chain.
    
  0.530
COL6A2
Collagen type VI alpha 2 chain.
 
 
0.502
MYSM1
Histone H2A deubiquitinase MYSM1.
    
 0.494
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.