STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE2ZUbiquitin conjugating enzyme E2 Z. (246 aa)    
Predicted Functional Partners:
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.993
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.898
FANCM
FA complementation group M.
    
 0.886
ENSCPUP00000011075
annotation not available
   
 0.843
RANBP2
E3 SUMO-protein ligase RanBP2-like.
   
 0.837
UBE2V2
Ubiquitin conjugating enzyme E2 V2.
    
 0.831
ATP5F1B
ATP synthase F1 subunit beta.
    
  0.816
UBOX5
U-box domain containing 5.
   
 0.811
UBA3
Ubiquitin like modifier activating enzyme 3.
   
 0.792
ATP5MC3
ATP synthase membrane subunit c locus 3.
 
 
 
 0.787
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.