STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM242Transmembrane protein 242. (157 aa)    
Predicted Functional Partners:
SCAF8
SR-related CTD associated factor 8.
      
 0.603
SERAC1
Serine active site containing 1.
      
 0.572
SIAE
Sialic acid acetylesterase.
      
 0.546
TULP4
TUB like protein 4.
      
 0.544
GTF2H5
General transcription factor IIH subunit 5.
      
 0.539
TFB1M
Transcription factor B1, mitochondrial.
      
 0.518
TMEM70
Transmembrane protein 70.
      
 0.513
CRYZL1
Crystallin zeta like 1.
      
 0.505
URB1
URB1 ribosome biogenesis homolog.
      
 0.478
HEATR1
HEAT repeat containing 1.
      
 0.459
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.