STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000021326annotation not available (549 aa)    
Predicted Functional Partners:
LOXL1
Lysyl oxidase like 1.
 
  
  0.828
ENSCPUP00000028999
annotation not available
 
      0.746
ENSCPUP00000025259
annotation not available
 
  
  0.665
LOX
Lysyl oxidase.
 
  
  0.563
PTK7
Protein tyrosine kinase 7 (inactive).
    
 0.560
ENSCPUP00000013810
annotation not available
    
 0.559
CD47
CD47 molecule.
   
  0.548
CD3D
CD3d molecule.
   
 0.534
NECTIN3
Nectin cell adhesion molecule 3.
    
  0.531
NECTIN1
Nectin cell adhesion molecule 1.
    
  0.531
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.