STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSMC3IPPSMC3 interacting protein. (195 aa)    
Predicted Functional Partners:
MND1
Meiotic nuclear divisions 1.
   
 0.998
PCNA
Proliferating cell nuclear antigen.
   
 
  0.928
DMC1
DNA meiotic recombinase 1.
   
 0.746
RAD51
RAD51 recombinase.
   
 0.737
SPO11
SPO11 initiator of meiotic double stranded breaks.
    
 
 0.671
KNL1
Kinetochore scaffold 1.
   
 0.587
RAD51C
RAD51 paralog C.
   
 0.587
RAD51D
RAD51 paralog D.
   
 0.575
RAD51B
RAD51 paralog B.
   
 0.575
MSH4
mutS homolog 4.
   
  
 0.540
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.