STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAP18Sin3A associated protein 18. (153 aa)    
Predicted Functional Partners:
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.997
PNN
Pinin, desmosome associated protein.
    
 0.992
ARID4A
AT-rich interaction domain 4A.
   
 
 0.981
ARID4B
AT-rich interaction domain 4B.
   
 
 0.981
EIF4A3
Eukaryotic translation initiation factor 4A3.
   
 0.979
RBM8A
RNA binding motif protein 8A.
   
 0.978
MAGOH
Mago homolog, exon junction complex subunit.
   
 0.977
SUDS3
SDS3 homolog, SIN3A corepressor complex component.
     
 0.966
PABPN1L
PABPN1 like, cytoplasmic.
   
 0.961
SRSF1
Serine and arginine rich splicing factor 1.
   
 0.951
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.