STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000021718annotation not available (183 aa)    
Predicted Functional Partners:
ATR
ATR serine/threonine kinase.
   
 0.999
TP53BP1
Tumor protein p53 binding protein 1.
    
 0.997
NBN
Nibrin.
    
 0.996
MRE11
MRE11 homolog, double strand break repair nuclease.
   
 0.996
WRN
WRN RecQ like helicase.
   
 0.994
RAD50
RAD50 double strand break repair protein.
   
 0.992
XRCC6
X-ray repair cross complementing 6.
    
 0.990
BRCA1
BRCA1 DNA repair associated.
    
 0.989
XRCC5
X-ray repair cross complementing 5.
    
 0.988
PAXIP1
PAX interacting protein 1.
   
 0.985
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.