STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGPL1Sphingosine-1-phosphate lyase 1. (589 aa)    
Predicted Functional Partners:
SGPP1
Sphingosine-1-phosphate phosphatase 1.
    
 0.960
SGPP2
Sphingosine-1-phosphate phosphatase 2.
    
 0.960
ABAT
4-aminobutyrate aminotransferase.
  
 0.953
ALDH5A1
Aldehyde dehydrogenase 5 family member A1.
   
 0.944
MED18
Mediator complex subunit 18.
    
 0.940
MED6
Mediator complex subunit 6.
    
 0.937
MED21
Mediator complex subunit 21.
    
  0.929
MED23
Mediator complex subunit 23.
     
 0.929
MED14
Mediator complex subunit 14.
     
 0.928
MED10
Mediator complex subunit 10.
     
 0.928
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.