STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPPC13Trafficking protein particle complex 13. (460 aa)    
Predicted Functional Partners:
TRAPPC12
Trafficking protein particle complex 12.
    
 0.993
TRAPPC5
Trafficking protein particle complex 5.
    
 0.988
TRAPPC2L
Trafficking protein particle complex 2 like.
    
 0.988
TRAPPC11
Trafficking protein particle complex 11.
   
 0.986
TRAPPC8
Trafficking protein particle complex 8.
   
 0.983
TRAPPC10
Trafficking protein particle complex 10.
     
 0.979
TRAPPC9
Trafficking protein particle complex 9.
     
 0.975
TRAPPC4
Trafficking protein particle complex 4.
     
 0.975
ENSCPUP00000002631
annotation not available
   
 0.913
TRAPPC6B
Trafficking protein particle complex 6B.
   
 0.913
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.