STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF6PHD finger protein 6. (364 aa)    
Predicted Functional Partners:
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.821
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.821
KDM2A
Lysine demethylase 2A.
    
 0.773
KDM2B
Lysine demethylase 2B.
    
 0.773
KDM6A
Lysine demethylase 6A.
   
 0.765
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.749
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
   
 0.744
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.743
DPY30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.729
HCFC2
Host cell factor C2.
   
 0.728
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.