STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUT7Terminal uridylyl transferase 7. (1544 aa)    
Predicted Functional Partners:
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 0.745
LIN28A
Lin-28 homolog A.
   
 0.744
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.737
CSTF2
Cleavage stimulation factor subunit 2.
    
 0.725
CLP1
Cleavage and polyadenylation factor I subunit 1.
     
 0.671
BICC1
BicC family RNA binding protein 1.
   
 0.662
CSTF1
Cleavage stimulation factor subunit 1.
     
 0.655
CSNK1A1
Casein kinase 1 alpha 1.
     
 0.621
DIS3L2
DIS3 like 3'-5' exoribonuclease 2.
    
 
 0.602
ENSCPUP00000018951
annotation not available
    
 0.567
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.