STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEPDC1BDEP domain containing 1B. (529 aa)    
Predicted Functional Partners:
KIF11
Kinesin family member 11.
   
  
 0.817
DLGAP5
DLG associated protein 5.
   
  
 0.806
BUB1B
BUB1 mitotic checkpoint serine/threonine kinase B.
   
    0.795
CEP55
Centrosomal protein 55.
   
  
 0.792
NUF2
NUF2 component of NDC80 kinetochore complex.
   
  
 0.787
LRAT
Lecithin retinol acyltransferase.
     
 0.743
SOAT1
Sterol O-acyltransferase 1.
   
 
 0.728
RDH10
Retinol dehydrogenase 10.
     
 0.725
PNPLA4
Patatin like phospholipase domain containing 4.
     
 0.720
KIF15
Kinesin family member 15.
   
  
 0.716
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.