STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE4DPhosphodiesterase 4D. (687 aa)    
Predicted Functional Partners:
PRKACB
Protein kinase cAMP-activated catalytic subunit beta.
   
 0.821
AK9
Adenylate kinase 9.
     
 0.820
ADCY9
Adenylate cyclase 9.
    
 0.778
ADCY7
Adenylate cyclase 7.
    
 0.776
ADCY2
Adenylate cyclase 2.
    
 0.776
ADCY8
Adenylate cyclase 8.
    
 0.765
ADCY1
Adenylate cyclase 1.
    
 0.765
CASK
Calcium/calmodulin dependent serine protein kinase.
    
 0.750
ENSCPUP00000016887
annotation not available
    
 0.750
ADK
Adenosine kinase.
     
 0.733
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.