STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000022158annotation not available (431 aa)    
Predicted Functional Partners:
ENSCPUP00000019191
annotation not available
 
   
  0.922
KIF3C
Kinesin family member 3C.
 
   
 0.898
ENSCPUP00000022159
annotation not available
 
      0.865
BAP1
BRCA1 associated protein 1.
    
 0.851
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
    
 0.736
SKP1
S-phase kinase associated protein 1.
    
  0.734
SIRT1
Sirtuin 1.
    
 0.731
JARID2
Jumonji and AT-rich interaction domain containing 2.
    
 0.716
AEBP2
AE binding protein 2.
    
  0.716
ARID4A
AT-rich interaction domain 4A.
    
 0.710
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.