STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTN4RL2Reticulon 4 receptor like 2. (441 aa)    
Predicted Functional Partners:
ENSCPUP00000000773
annotation not available
    
  0.802
ADGRL2
Adhesion G protein-coupled receptor L2.
    
  0.751
ADGRL3
Adhesion G protein-coupled receptor L3.
    
  0.751
NTNG1
Netrin G1.
    
 0.694
CASK
Calcium/calmodulin dependent serine protein kinase.
    
  0.587
ENSCPUP00000016887
annotation not available
    
  0.587
LIMS1
LIM zinc finger domain containing 1.
    
 0.568
LIMS2
LIM zinc finger domain containing 2.
    
 0.568
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
    
 0.538
PHF5A
PHD finger protein 5A.
    
  0.532
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.