STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CACHD1Cache domain containing 1. (1253 aa)    
Predicted Functional Partners:
CACNG1
Calcium voltage-gated channel auxiliary subunit gamma 1.
    
 0.973
CACNB4
Calcium voltage-gated channel auxiliary subunit beta 4.
    
 0.947
CACNB3
Calcium voltage-gated channel auxiliary subunit beta 3.
    
 0.846
CACNB1
Calcium voltage-gated channel auxiliary subunit beta 1.
    
 0.846
CACNB2
Calcium voltage-gated channel auxiliary subunit beta 2.
    
 0.846
CACNA1B
Calcium voltage-gated channel subunit alpha1 B.
    
 0.840
CACNA1E
Calcium voltage-gated channel subunit alpha1 E.
    
 0.840
CACNA1G
Calcium voltage-gated channel subunit alpha1 G.
     
 0.795
CACNA2D2
Calcium voltage-gated channel auxiliary subunit alpha2delta 2.
     
0.772
CACNA2D1
Calcium voltage-gated channel auxiliary subunit alpha2delta 1.
     
0.772
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.