STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000022754annotation not available (669 aa)    
Predicted Functional Partners:
LOC106891816
Plectin-like.
 
     0.917
ENSCPUP00000027040
annotation not available
 
      0.900
ITGB4
Integrin subunit beta 4.
   
 0.766
JUP
Junction plakoglobin.
    
 0.721
ENY2
ENY2 transcription and export complex 2 subunit.
    
 0.652
CTNNB1
Catenin beta 1.
    
 0.644
TRRAP
Transformation/transcription domain associated protein.
   
 0.642
DSC1
Desmocollin 1.
   
 0.640
ENSCPUP00000006684
annotation not available
    
 0.635
LOC106897508
Intersectin-2-like.
    
 0.635
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.