STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106901504Casein kinase I isoform epsilon. (416 aa)    
Predicted Functional Partners:
LTV1
LTV1 ribosome biogenesis factor.
    
 0.938
BYSL
Bystin like.
    
 0.901
RIOK2
RIO kinase 2.
    
 0.897
ARNTL
Aryl hydrocarbon receptor nuclear translocator like.
    
 0.885
CRY2
Cryptochrome circadian regulator 2.
    
 0.882
PER2
Period circadian regulator 2.
    
 0.872
PER3
Period circadian regulator 3.
    
 0.872
TSR1
TSR1 ribosome maturation factor.
    
 0.856
CSNK1A1
Casein kinase 1 alpha 1.
  
 
0.855
AXIN1
Axin-1.
    
 0.843
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.