STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRP19Signal recognition particle 19. (179 aa)    
Predicted Functional Partners:
SRP54
Signal recognition particle 54.
   
 0.999
SRP68
Signal recognition particle 68.
    
 0.999
SRP14
Signal recognition particle 14.
   
 0.999
SRP9
Signal recognition particle 9.
   
 0.999
SRP72
Signal recognition particle 72.
    
 0.998
SRPRA
SRP receptor subunit alpha.
   
 
 0.977
SRPRB
SRP receptor subunit beta.
   
 
 0.967
RPL19
Ribosomal protein L19.
   
 0.958
RPL23A
Ribosomal protein L23a.
   
 0.958
RPL4
Ribosomal protein L4.
    
 0.953
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.