STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATPSCKMTATP synthase c subunit lysine N-methyltransferase. (249 aa)    
Predicted Functional Partners:
BYSL
Bystin like.
   
 0.650
NOB1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.644
TSR1
TSR1 ribosome maturation factor.
   
  0.644
LTV1
LTV1 ribosome biogenesis factor.
   
 0.639
LSS
Lanosterol synthase.
    
 0.636
SIGMAR1
Sigma non-opioid intracellular receptor 1.
   
 0.635
MRPS5
Mitochondrial ribosomal protein S5.
    
 0.631
RPS2
40S ribosomal protein S2.
    
 0.631
NDUFAF6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
    
 0.621
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
    
 0.621
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.