STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP48Small nuclear ribonucleoprotein U11/U12 subunit 48. (339 aa)    
Predicted Functional Partners:
SF3B3
Splicing factor 3b subunit 3.
    
 0.989
SF3B1
Splicing factor 3b subunit 1.
   
 0.988
CDC5L
Cell division cycle 5 like.
   
 0.987
PRPF8
pre-mRNA processing factor 8.
   
 0.986
ZMAT5
Zinc finger matrin-type 5.
    
 0.986
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.986
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 0.986
RNPC3
RNA binding region (RNP1, RRM) containing 3.
    
 0.985
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.985
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.984
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.