STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000023144annotation not available (191 aa)    
Predicted Functional Partners:
GEMIN8
Gem nuclear organelle associated protein 8.
    
 0.998
GEMIN2
Gem nuclear organelle associated protein 2.
    
 0.990
STRAP
Serine/threonine kinase receptor associated protein.
    
 0.990
DDX20
DEAD-box helicase 20.
    
 0.989
GEMIN4
Gem nuclear organelle associated protein 4.
    
 0.986
GEMIN5
Gem nuclear organelle associated protein 5.
    
 0.980
LOC106898940
Survival motor neuron protein-like.
    
 0.977
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.951
ENSCPUP00000023951
annotation not available
    
 0.947
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
     
 0.937
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.