STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPTSSBSerine palmitoyltransferase small subunit B. (128 aa)    
Predicted Functional Partners:
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
    
 0.970
SPTSSA
Serine palmitoyltransferase small subunit A.
  
  
0.953
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
    
 0.748
ISM1
Isthmin 1.
    
 0.748
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
    
 0.748
ORMDL3
ORMDL sphingolipid biosynthesis regulator 3.
     
 0.732
ORMDL1
ORMDL sphingolipid biosynthesis regulator 1.
     
 0.732
ORMDL2
ORMDL sphingolipid biosynthesis regulator 2.
     
 0.732
ALAS1
5'-aminolevulinate synthase 1.
    
 0.608
GCAT
Glycine C-acetyltransferase.
    
 0.608
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.