STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THSD4Thrombospondin type 1 domain containing 4. (1025 aa)    
Predicted Functional Partners:
B3GLCT
Beta 3-glucosyltransferase.
     
 0.697
POFUT2
Protein O-fucosyltransferase 2.
     
 0.639
SPON1
Spondin 1.
     
0.602
THSD1
Thrombospondin type 1 domain containing 1.
     
 0.526
ENSCPUP00000008456
annotation not available
 
   
 0.462
UMPS
Uridine monophosphate synthetase.
      
 0.453
SPON2
Spondin 2.
     
 0.451
DNAH10
Dynein axonemal heavy chain 10.
      
 0.437
ADAMTSL1
ADAMTS like 1.
     
0.405
ADAMTSL3
ADAMTS like 3.
     
0.405
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.