STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF148Zinc finger protein 148. (791 aa)    
Predicted Functional Partners:
ENSCPUP00000000773
annotation not available
    
  0.766
MYSM1
Histone H2A deubiquitinase MYSM1.
    
  0.599
MRPS7
Mitochondrial ribosomal protein S7.
    
 0.571
MRPS14
Mitochondrial ribosomal protein S14.
    
 0.565
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.564
KDM6A
Lysine demethylase 6A.
   
 0.545
SUFU
SUFU negative regulator of hedgehog signaling.
   
 0.543
MRPS10
Mitochondrial ribosomal protein S10.
   
  0.533
GTF3C3
General transcription factor IIIC subunit 3.
    
 0.533
LAMTOR2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
   
  0.532
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.