STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000023537annotation not available (145 aa)    
Predicted Functional Partners:
ENSCPUP00000028515
annotation not available
  
     0.493
ENSCPUP00000028516
annotation not available
  
     0.493
ENSCPUP00000005167
annotation not available
  
     0.478
ENSCPUP00000005267
annotation not available
  
     0.474
ENSCPUP00000007696
annotation not available
  
     0.461
ENSCPUP00000021212
annotation not available
  
     0.443
ENSCPUP00000027471
annotation not available
  
     0.417
ENSCPUP00000007842
annotation not available
  
     0.409
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.