STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106902235Little elongation complex subunit 1-like. (2208 aa)    
Predicted Functional Partners:
ERCC6
DNA excision repair protein ERCC-6-like.
   
  0.940
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.938
ELP2
Elongator acetyltransferase complex subunit 2.
    
  0.937
AFF4
AF4/FMR2 family member 4.
    
  0.936
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
  0.936
CDC73
Cell division cycle 73.
    
  0.935
AFF1
AF4/FMR2 family member 1.
    
  0.935
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
  0.929
SSRP1
Structure specific recognition protein 1.
    
  0.929
ICE2
Interactor of little elongation complex ELL subunit 2.
    
  0.929
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.