STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR72WD repeat domain 72. (1085 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.993
TTC37
Tetratricopeptide repeat domain 37.
    
 0.884
CDC73
Cell division cycle 73.
    
 0.848
DDX20
DEAD-box helicase 20.
    
 0.747
DDB1
Damage specific DNA binding protein 1.
    
 0.746
HBS1L
HBS1 like translational GTPase.
    
 0.739
GEMIN8
Gem nuclear organelle associated protein 8.
    
 0.733
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.731
ERCC6
DNA excision repair protein ERCC-6-like.
   
 0.725
LOC106898940
Survival motor neuron protein-like.
   
 0.722
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.